DY-549 and DY-649 on protein microarrays

 

Schröder C., Jacob A., Tonack S., Radon T.P., Sill M., Zicknick M., Rüffer S., Costello E., Noeptolemos J.P., Crnogorac-Jurcevic T., Bauer A., Fellenberg K., Hoheisel J.D., Dual-color proteomic profiling of complex samples with a microarray of 810 cancer-related antibodies, Molecular and Cellular Proteomics,  in press.

 

DY-635 and DY-647-biotin conjugates

 

Luschtinetz F., Dosche C., Kumke M.U., Influence of Streptavidin on the Absorption and Fluorescence Properties of Cyanine Dyes, Bioconjugate Chemistry, 20(2009)576-582.

 

DY-676, DY-681, DY-731, DY-751 and DY-776 for molecular imaging

 

Pauli J., Vag T., Haag R., Spieles M., Wenzel M., Kaiser W.A., Resch-Genger U., Hilger I., An in vitro characterization study of new near infrared dyes for molecular imaging, European Journal of Medicinal Chemistry, 44(2009)3496-3503.

 

DY-730, DY-731, DY-732, DY-734 and DY-780 in silica nanoparticles

Herz E., Ow H., Bonner D., Burns A., Wiesner U., Dye structure-optical property correlations in near-infrared fluorescent core-shell silica nanoparticles, Journal of Materials Chemistry, DOI:10/1039/b902286d.

 

V03-01136 as fat stain

Heilig A., Göggerle A., Hinrichs J., Multiphase visualisation of fat containing beta-lactoglobulin-k-carrageenan gels by confocal scanning laser microscopy, using a novel dye, V03-01136, for fat staining, LWT - Food Science and Technology, 42(2009)646-53.

 

DY-676 for in vivo imaging

Deissler V., Rüger R., Frank W., Fahr A., Kaiser W.A., Hilger I., Fluorescent Liposomes asContrast Agents for In Vivo Optical Imaging of Edemas in Mice, Small, 4(2008)1240-6.

 

DY-676 for in vivo imaging

Lisy M.R., Goermar A., Thomas C., Pauli J., Resch-Genger U., Kaiser W.A., Hilger I., In Vivo Near-infrared Fluorescence Imaging of Carcinoembryonic Antigen-expressing Tumor Cells in Mice, Radiology, 247(2008)779-787.

 

DY-680 and DY-780 in proteomics

Riederer I.M., Herrero R.M., Leuba G., Riederer B.M., Serial protein labeling with infrared maleimide dyes to identify cysteine modifications, Journal of Proteomics, 71(2008)222-230.

 

DY-680 and DY-780 in proteomics (among others) / Review

Riederer B.M., Non-covalent and covalent protein labeling in two-dimensional gel electrophoresis, Journal of Proteomics, 71(2008)231-244.

 

DY-547-Streptavidin

Mora J.R., Zielinsky T.L., Nelson B.P., Getts R.C., Protein detection enhanced by 3DNA dendrimer signal amplification, BioTechniques, 44(2008)815-818.

 

DY-665-X as standard for NIR-quantum yield measurements

Fischer G.M., Ehlers A.P., Zumbusch A., Daltrozzo E., Near-Infrared Dyes and Fluorophores Based on Diketopyrrolopyrroles, Angew. Chem. Intl. Ed., 46(2007)3750-3753.

 

DY-548 and DY-648 on microarrays:

Auer J., Bläss M., Schulze-Koops H., Russwurm S., Nagel T., Kalden J.R., Röllinghoff M., Beuscher H.U., Expression and regulation of CCL18 in synovial fluid neutrophils of patients with rheumatoid arthritis, Arthritis Research & Therapy, 9(2007)5R94, 12 pages.

 

DY-547 on microarrays

Kusnezow W., Banzon V., Schröder C., Schaal R., Hoheisel J.D., Rüffer S., Luft P., Duschl A., Syagailo Y.V., Antibody microarray-based profiling of complex specimens: systematic evaluation of labeling strategies, Proteomics, 7(2007)1786-1799.

 

DY-633-labeled secondary antibody

Derwinska K., Sauer U., Preininger C., Reproducibility of hydrogel slides in on-chip immunoassays with respect to scanning mode, spot circularity, and data filtering, Analytical Biochemistry, 370(2007)38-46.

 

DY-633-labeled secondary antibody

Derwinska K., Gheber L.A., Preininger C., A comparative analysis of polyurethane hydrogel for immobilization of IgG on chips, Analytica Chimica Acta, 592(2007)132-138.

 

DY-485XL in 4Pi microscopy:

Lang M.C., Engelhardt J., Hell S.W., 4Pi microscopy with linear fluorescence excitation, Optics Letters, 32(2007)259-61.

 

DY-485XL-labeled antibody in microscopy:

Staudt, T., Lang M., Medda R., Engelhardt J., Hell S. W., 2,2'-Thiodiethanol: a new water soluble mounting medium for high resolution optical microscopy, Microsc. Res. Tech., 70(2007) 1-9.

 

DY-633-biotin in microscopy:

Rinne J., Albarran B., Jylhävä J., Ihalainen T.O., Kankaanpää P., Hytönen V.P., Stayton P.S., Kulomaa M.S., Vihinen-Ranta M., Internalization of novel non-viral vector TAT-streptavidin into human cells, BMC Biotechnology, 7(2007)1-14.

 

DY-676 as contrast agent:

Lisy M.-R., Hartung A., Lang C., Schüler D., Richter W., Reichenbach J.R., Kaiser W.A., Hilger I., Fluorescent Bacterial Magnetic Nanoparticles as Bimodal Contrast Agents, Investigative Radiology, 42(2007)235-41.

 

DY-547-labeled cGMP:

Biskup C., Kusch J., Schulz E., Nache V., Schwede F., Lehmann F., Hagen V., Benndorf K., Relating lingand binding to activation gating in CNGA2 channels, nature, 446(2007)440-3.

 

DY-415, DY-550 and DY-631 for biochips:

Glasenapp C., Mönch W., Krause H., Zappe H., Biochip reader with dynamic holographic excitation and hyperspectral fluorescence detection, Journal of Biomedical Optics, 12(2007)014038, 8 pages.

 

Volkmer T., Becker C., Prodöhl A., Finger C., Schneider D., Assembly of a transmembrane b-Type cytochrome is mainly driven by transmembrane helix interactions, Biochimica et Biophysica Acta (BBA) - Biomembranes, 1758(2006)1815-1822.

 

DY-676 in in-vivo imaging:

Lisy M.-R., Schüler E., Lehmann F., Czerney P., Kaiser W.A., Hilger I., Diagnosis of peritonitis using near-infrared optical imaging of in vivo labeled monocytes-macrophages, Journal of Biomedical Optics, 11(2006)064014, 9 pages.

 

DY-647-labeled streptavidin:

Kusnezow W., Syagailo Y.V., Rffer S., Baudenstiel N., Gauer C., Hoheisel J.D., Wild D., Goychuk I., Optimal Design of Microarray Immunoassays to Compensate for Kinetic Limitations, Molecular & Cellular Proteomics, 5.9(2006)1681-96.

 

DY-547 and DY-648-labeled benzylguanines:

Keppler A., Arrivoli C., Sironi L., Ellenberg J., Fluorophores for live cell imaging of AGT fusion proteins across the visible spectrum, BioTechniques, 41(2006)167-75.

 

DY-547 and DY-631 in confocal microscopy:

Michalakis S., Reisert J., Geiger H., Wetzel C., Zong X., Bradley J., Spehr M., Huellt S., Gerstner A., Pfeifer A., Hatt H., Yau K.-W., Biel M., Loss of CNGB1 Protein Leads to Olfactory Dysfunction and Subciliary Cyclic Nucleotide-gated Channel Trapping, J. Biol. Chem., 281(2006)35156-66.

 

DY-521XL in duplex-RT-PCR:

Dreier J., Stoermer M., Maede D., Burckhardt S., Kleesiek K., Enhanced Reverse Transcription-PCR Assay for Detection of Norovirus Genogroup I, Journal of Clinical Microbiology, 44(2006)2714-20.

 

DY-630 labeled peptide to study GPCRs:

Schneider E., Mayer M., Ziemek R., Li L., Hutzler C., Bernhardt G., Buschauer A., A Simple and Powerful Flow Cytometric Method for the Simultaneous Determination of Multiple Parameters at G Protein-Coupled Receptor Subtypes, ChemBioChem, 7(2006)1400-9.

 

DY-636 in a SNP hairpin probe:

Marmé N., Friedrich A., Denapaite D., Hakenbeck R., Knemeyer J.-P., Single nucleotide polymorphism analysis using different colored dye dimer probes, Chemical Physics Letters, 428(2006)440-5.

 

DY-520XL in cross correlation FCS:

Kosturko L.D., Maggipinto M.J., Korza G., Lee J.W., Carson J.H., Barbarese E., Heterogeneous Nuclear Ribonucleoprotein (hnRNP) E1 Binds to hnRNP A2 and Inhibits Translation of A2 Response Element mRNAs, Mol. Biol. Cell, 17(2006)3521-33.

 

DY-630-biotin in single molecule detection:

Jung S., Angerer B., Loescher F., Niehren S., Winkle J., Seeger S., Biotin-Functionalized Cellulose- Based Monolayers as Sensitive Interfaces for the Detection of Single Molecules, ChemBioChem, 7(2006)900-3.

 

DY-647 and DYQ-660 as FRET pair:

Käppel N.D.
, Dankbar D.M., Gauglitz G., DNA Quantification in Nanoliter Volumes, Microchim Acta , 154(2006)65-71.

 

DY-633-neutravidin as control on peptide microarrays:

Andresen H., Grötzinger C., Zarse K., Kreuzer O.J., Ehrentreich-Förster E., Bier F.F., Functional peptide microarrays for specific and sensitive antibody diagnostics, Proteomics, 6(2006)1376-84.

 

DY-633-streptavidin

Andresen H., Zarse K., Grötzinger C., Hollidt J.M., Ehrentreich-Förster E., Bier F.F., Kreuzer O.J., Development of peptide microarrays for epitope mapping of antibodies against the human TSH receptor, Journal of Immunological Methods, 315(2006)11-18.

 

DY-781 in sequencing application:

Rothenstein D., Haible D., Dasgupta I., Dutt N., Patil B.L., Jeske H.,Biodiversity and recombination of cassava-infecting begomoviruses from southern India, Archives of Virology, 151(2006)55-69.

 

DY-681-labeled primers in asymmetric PCR:

de Almeida R.A., Heuser T., Blaschke R., Bartram C.R., Janssen J.W.G., Control of MYEOV Protein Synthesis by Upstream Open Reading Frames, J. Biol. Chem, 281(2006) 695-704.

 

DY-633-labeled primers for microarray applications:

Sauer U., Preininger C., Hany-Schmatzberger R., Quick and simple: quality control of microarray data, Bioinformatics, 21(2005)1572-8.

 

DY-630 in DNA- and protein arrays:

Preininger C., Sauer U., Dayteg J., Pichler R., Optimizing processing parameters for signal enhancement of oligonucleotide and protein arrays on ARChip Epoxy, Bioelectrochemistry, 67(2005)155 - 162.

 

DY-633-labeled peptides:

von Nickisch-Rosenegk M., Ehrentreich-Forster E., Strehlo R., Christmann A., Bier F.F., Chemically synthesized zinc finger molecules as nano-addressable probes for double-stranded DNAs, Journal of Nanobiotechnology, 3(2005)5.

 

Detection of DY-681-labeled proteins:

Arndt V., Daniel C., Nastainczyk W., Alberti S., Höhfeld J., BAG-2 Acts as Inhibitor of the Chaperone-associated Ubiquitin Ligase CHIP, Molecular Biology of the Cell, 16(2005)5891-5900.

 

DY-547 and DY-631 in microscopy:

Michalakis S., Geiger H., Haverkamp S., Hofmann F., Gerstner A., Biel M., Impaired Opsin Targeting and Cone Photoreceptor Migration in the Retina of Mice Lacking the Cyclic Nucleotide-Gated Channel CNGA3, Investigative Ophthalmology & Visual Science, 46(2005)1516-1524.

 

DY-547 in microscopy:

Hüttl S., Michalakis S., Seeliger, Luo D.-G., Acar N., Geiger H., Hudl K., Mader R., Haverkamp S., Moser M., Pfeifer A., Gerstner A., Yau K.-W., Biel M., Impaired Channel Targeting and Retinal Degeneration in Mice Lacking the Cyclic Nucleotide-Gated Channel Subunit CNGB1, The Journal of Neuroscience, 25(2005)130-138.

 

DY-681 and DY-781 in sequencing application:

Kaltenpoth M., Strohm E., Gadau J., Polymorphic microsatellite markers for a solitary digger wasp, the European beewolf (Philanthus triangulum; Hymenoptera, Sphecidae), Molecular Ecology Notes 4(2004)589-592.

 

Review:

Peng X., Draney D., Near-IR fluorescent dyes for biological applications, LabPlus International, April/May 2004.

 

EVOblue™30 in TIRF-microscopy:

Ruckstuhl T., Seeger S., Attoliter detection volumes by confocal total-internal-reflection fluorescence microscopy, Optics Letters, 29(2004)568-571.

 

Detection of DY-630-Maleimid-labeled proteins:

Diekmann S., Siegmund G., Roecker A., Klemm D.O., Regioselective nitrilotriacetic acid-cellulose-nickel-complexes for immobilisation of His₆-tag proteins, Cellulose, 10(2003)53-63.

 

DY-630 on DNA-microarrays:

Preininger C., Sauer U., Quality control of chip manufacture and chip analysis using epoxy-chips as model, Sensors and Actuators B, 90(2003)98-103.

 

Optical properties of DY-630 and DY-635:

Czerney P., Lehmann F., Wenzel M., Buschmann V., Dietrich A., Mohr G.J., Taylor-Made Dyes for Fluorescence Correlation Spectroscopy (FCS), Biological Chemistry, 382(2001)495-498.